Football clubs dissolved or disbanded in 1999.
Atlético Yucatán—Dissolved in 1999—1988
Beerschot VAC—Dissolved in 1999—1899
Beitar Ramla—Dissolved in 1999—1951
Chilonzor—Dissolved in 1999—1993
Deportivo Unicosta—Dissolved in 1999—1995
Dvin—Dissolved in 1999—1982
Elektromos—Dissolved in 1999—1921
Empor Rostock—Dissolved in 1999—1954
FCO Neudorf—Dissolved in 1999—UNK
GE Novorizontino—Dissolved in 1999—1973
Germinal Ekeren—Dissolved in 1999—1920
Gázszer FC—Dissolved in 1999—1994
Hapoel Ashdod—Dissolved in 1999—1957
Ikast—Dissolved in 1999—1935
Izumrud-Neftyanik—Dissolved in 1999—1991
Jacksonville Cyclones—Dissolved in 1999—1995
Kasakh—Dissolved in 1999—1985
Krasnogvardeyets—Dissolved in 1999—1994
Lantana—Dissolved in 1999—1004
Liedekerke—Dissolved in 1999—1940
Maryland Mania—Dissolved in 1999—1999
Mashinostroitel Pskov—Dissolved in 1999—1970
Mitra Surabaya—Dissolved in 1999—1993
New Orleans Storm—Dissolved in 1999—1993
Nippon Steel Yawata—Dissolved in 1999—1950
Olimpik Teteven—Dissolved in 1999—1992
Preußen Werl—Dissolved in 1999—1911
SK Odesa—Dissolved in 1999—1944
SK Plzeň—Dissolved in 1999—1894
Saint-Denis Saint-Leu—Dissolved in 1999—1996